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1

QIIME allows analysis of high-throughput community sequencing data

Caporaso, J Gregory, Kuczynski, Justin, Stombaugh, Jesse, Bittinger, Kyle, Bushman, Frederic D, Costello, Elizabeth K, Fierer, Noah, Peña, Antonio Gonzalez, Goodrich, Julia K, Gordon, Jeffrey I

Journal:

Year:

2010

Language:

english

File:

PDF, 257 KB

english, 2010

2

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

Kelly S. Ramirez, Joseph M. Craine, Noah Fierer

Journal:

Global Change Biology

Year:

2012

Language:

english

File:

PDF, 225 KB

english, 2012

3

Nitrogen fertilization inhibits soil microbial respiration regardless of the form of nitrogen applied

Kelly S. Ramirez, Joseph M. Craine, Noah Fierer

Journal:

Soil Biology and Biochemistry

Year:

2010

Language:

english

File:

PDF, 300 KB

english, 2010

4

Earthworms' place on Earth

Journal:

Year:

2019

Language:

english

File:

PDF, 355 KB

english, 2019

5

Soil bacterial and fungal communities across a pH gradient in an arable soil

Rousk, Johannes, Bååth, Erland, Brookes, Philip C, Lauber, Christian L, Lozupone, Catherine, Caporaso, J Gregory, Knight, Rob, Fierer, Noah

Journal:

The ISME Journal

Year:

2010

Language:

english

File:

PDF, 1016 KB

english, 2010

6

Testing the functional significance of microbial community composition

Strickland, Michael S., Lauber, Christian, Fierer, Noah, Bradford, Mark A.

Journal:

Year:

2009

Language:

english

File:

PDF, 1.29 MB

english, 2009

7

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

Dominguez-Bello, M. G., Costello, E. K., Contreras, M., Magris, M., Hidalgo, G., Fierer, N., Knight, R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 624 KB

english, 2010

8

Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria

Barberán, Albert, Ramirez, Kelly S., Leff, Jonathan W., Bradford, Mark A., Wall, Diana H., Fierer, Noah, Klironomos, John

Journal:

Ecology Letters

Year:

2014

Language:

english

File:

PDF, 1008 KB

english, 2014

9

Embracing the unknown: disentangling the complexities of the soil microbiome

Journal:

Nature Reviews Microbiology

Year:

2017

Language:

english

File:

PDF, 2.21 MB

english, 2017

10

The Future of Environmental DNA in Forensic Science

Allwood, Julia S, Fierer, Noah, Dunn, Robert R

Journal:

Applied and Environmental Microbiology

Year:

2019

Language:

english

File:

PDF, 473 KB

english, 2019

11

Global patterns in belowground communities

Noah Fierer, Michael S. Strickland, Daniel Liptzin, Mark A. Bradford, Cory C. Cleveland

Journal:

Ecology Letters

Year:

2009

Language:

english

File:

PDF, 442 KB

english, 2009

12

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling

Diana R. Nemergut, Alan R. Townsend, Sarah R. Sattin, Kristen R. Freeman, Noah Fierer, Jason C. Neff, William D. Bowman, Christopher W. Schadt, Michael N. Weintraub, Steven K. Schmidt

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 476 KB

english, 2008

13

From the Cover: The diversity and biogeography of soil bacterial communities

Journal:

Proceedings of the National Academy of Sciences

Year:

2006

Language:

english

File:

PDF, 450 KB

english, 2006

14

Metagenomic and Small-Subunit rRNA Analyses Reveal the Genetic Diversity of Bacteria, Archaea, Fungi, and Viruses in Soil

Edwards, R. A., Felts, B., Rayhawk, S., Fierer, N., Breitbart, M., Nulton, J., Salamon, P., Lozupone, C., Jones, R., Robeson, M.

Journal:

Applied and Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 298 KB

english, 2007

15

TOWARD AN ECOLOGICAL CLASSIFICATION OF SOIL BACTERIA

Fierer, Noah, Bradford, Mark A., Jackson, Robert B.

Journal:

Year:

2007

Language:

english

File:

PDF, 199 KB

english, 2007

16

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

Christian L. Lauber, Michael S. Strickland, Mark A. Bradford, Noah Fierer

Journal:

Soil Biology and Biochemistry

Year:

2008

Language:

english

File:

PDF, 307 KB

english, 2008

17

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

Kathryn G. Eilers, Christian L. Lauber, Rob Knight, Noah Fierer

Journal:

Soil Biology and Biochemistry

Year:

2010

Language:

english

File:

PDF, 634 KB

english, 2010

18

Digging deeper to find unique microbial communities: The strong effect of depth on the structure of bacterial and archaeal communities in soil

Kathryn G. Eilers, Spencer Debenport, Suzanne Anderson, Noah Fierer

Journal:

Soil Biology and Biochemistry

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

19

Bacterial Community Variation in Human Body Habitats Across Space and Time

Costello, E. K., Lauber, C. L., Hamady, M., Fierer, N., Gordon, J. I., Knight, R.

Journal:

Year:

2009

Language:

english

File:

PDF, 322 KB

english, 2009

20

Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays

Fierer, N., Jackson, J. A., Vilgalys, R., Jackson, R. B.

Journal:

Applied and Environmental Microbiology

Year:

2005

Language:

english

File:

PDF, 159 KB

english, 2005

21

Bacterial Communities Associated with the Lichen Symbiosis

Bates, S. T., Cropsey, G. W. G., Caporaso, J. G., Knight, R., Fierer, N.

Journal:

Applied and Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

22

From Animalcules to an Ecosystem: Application of Ecological Concepts to the Human Microbiome

Fierer, Noah, Ferrenberg, Scott, Flores, Gilberto E., González, Antonio, Kueneman, Jordan, Legg, Teresa, Lynch, Ryan C., McDonald, Daniel, Mihaljevic, Joseph R., O'Neill, Sean P., Rhodes, Matthew E.,

Journal:

Annual Review of Ecology Evolution and Systematics

Year:

2012

Language:

english

File:

PDF, 527 KB

english, 2012

23

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

Fierer, Noah, Lauber, Christian L, Ramirez, Kelly S, Zaneveld, Jesse, Bradford, Mark A, Knight, Rob

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 934 KB

english, 2012

24

Global drivers and patterns of microbial abundance in soil

Serna-Chavez, Hector M., Fierer, Noah, van Bodegom, Peter M.

Journal:

Global Ecology and Biogeography

Year:

2013

Language:

english

File:

PDF, 792 KB

english, 2013

25

Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States

Fierer, N., Ladau, J., Clemente, J. C., Leff, J. W., Owens, S. M., Pollard, K. S., Knight, R., Gilbert, J. A., McCulley, R. L.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

26

Sensitivity of soil respiration and microbial communities to altered snowfall

Aanderud, Zachary T., Jones, Stuart E., Schoolmaster, Donald R., Fierer, Noah, Lennon, Jay T.

Journal:

Soil Biology and Biochemistry

Year:

2013

Language:

english

File:

PDF, 740 KB

english, 2013

27

Using network analysis to explore co-occurrence patterns in soil microbial communities

Barberán, Albert, Bates, Scott T, Casamayor, Emilio O, Fierer, Noah

Journal:

The ISME Journal

Year:

2012

Language:

english

File:

PDF, 525 KB

english, 2012

28

Modern water/rock reactions in Oman hyperalkaline peridotite aquifers and implications for microbial habitability

Miller, Hannah M., Matter, Jürg M., Kelemen, Peter, Ellison, Eric T., Conrad, Mark E., Fierer, Noah, Ruchala, Tyler, Tominaga, Masako, Templeton, Alexis S.

Journal:

Geochimica et Cosmochimica Acta

Year:

2016

Language:

english

File:

PDF, 4.15 MB

english, 2016

29

Increased mitochondrial genetic diversity in persons infected with hepatitis C virus

Campo, David S., Roh, Ha-Jung, Pearlman, Brian L., Fierer, Daniel S., Ramachandran, Sumathi, Vaughan, Gilberto, Hinds, Andrew, Dimitrova, Zoya, Skums, Pavel, Khudyakov, Y.

Journal:

CMGH Cellular and Molecular Gastroenterology and Hepatology

Year:

2016

Language:

english

File:

PDF, 2.98 MB

english, 2016

30

Biodiversity gradients in obligate symbiotic organisms: exploring the diversity and traits of lichen propagules across the United States

Tripp, Erin A., Lendemer, James C., Barberán, Albert, Dunn, Robert R., Fierer, Noah

Journal:

Journal of Biogeography

Year:

2016

Language:

english

File:

PDF, 672 KB

english, 2016

31

A global atlas of the dominant bacteria found in soil

Delgado-Baquerizo, Manuel, Oliverio, Angela M., Brewer, Tess E., Benavent-González, Alberto, Eldridge, David J., Bardgett, Richard D., Maestre, Fernando T., Singh, Brajesh K., Fierer, Noah

Journal:

Year:

2018

Language:

english

File:

PDF, 1.94 MB

english, 2018

32

Bacterial Communities Associated with the Surfaces of Fresh Fruits and Vegetables

Leff, Jonathan W., Fierer, Noah, Berg, Gabriele

Journal:

Year:

2013

Language:

english

File:

PDF, 1.84 MB

english, 2013

33

Controls on microbial CO2 production: a comparison of surface and subsurface soil horizons

Noah Fierer, Andrew S. Allen, Joshua P. Schimel, Patricia A. Holden

Journal:

Global Change Biology

Year:

2003

Language:

english

File:

PDF, 206 KB

english, 2003

34

Influence of Drying–Rewetting Frequency on Soil Bacterial Community Structure

N. Fierer, J.P. Schimel, P.A. Holden

Journal:

Microbial Ecology

Year:

2003

Language:

english

File:

PDF, 154 KB

english, 2003

35

The Biogeography of Ammonia-Oxidizing Bacterial Communities in Soil

Noah Fierer, Karen M. Carney, M. Claire Horner-Devine, J. Patrick Megonigal

Journal:

Microbial Ecology

Year:

2009

Language:

english

File:

PDF, 346 KB

english, 2009

36

Microbial consumption and production of volatile organic compounds at the soil-litter interface

Kelly S. Ramirez, Christian L. Lauber, Noah Fierer

Journal:

Biogeochemistry

Year:

2010

Language:

english

File:

PDF, 431 KB

english, 2010

37

Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes

Haiyan Chu, Noah Fierer, Christian L. Lauber, J. G. Caporaso, Rob Knight, Paul Grogan

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 647 KB

english, 2010

38

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

Christian L. Lauber, Nicholas Zhou, Jeffrey I. Gordon, Rob Knight, Noah Fierer

Journal:

FEMS Microbiology Letters

Year:

2010

Language:

english

File:

PDF, 181 KB

english, 2010

39

Widespread coupling between the rate and temperature sensitivity of organic matter decay

Craine, Joseph M., Fierer, Noah, McLauchlan, Kendra K.

Journal:

Nature Geoscience

Year:

2010

Language:

english

File:

PDF, 724 KB

english, 2010

40

Influence of Drying-Rewetting Frequency on Soil Bacterial Community Structure

N. Fierer, J. P. Schimel and P. A. Holden

Journal:

Microbial Ecology

Year:

2003

Language:

english

File:

PDF, 456 KB

english, 2003

41

Unlocking the potential of metagenomics through replicated experimental design

Knight, Rob, Jansson, Janet, Field, Dawn, Fierer, Noah, Desai, Narayan, Fuhrman, Jed A, Hugenholtz, Phil, van der Lelie, Daniel, Meyer, Folker, Stevens, Rick, Bailey, Mark J, Gordon, Jeffrey I, Kowalc

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.16 MB

english, 2012

42

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

Lauber, C. L., Hamady, M., Knight, R., Fierer, N.

Journal:

Applied and Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 531 KB

english, 2009

43

Searching for unifying principles in soil ecology

Noah Fierer, A. Stuart Grandy, Johan Six, Eldor A. Paul

Journal:

Soil Biology and Biochemistry

Year:

2009

Language:

english

File:

PDF, 194 KB

english, 2009

44

Rates of in situ carbon mineralization in relation to land-use, microbial community and edaphic characteristics

Michael S. Strickland, Mac A. Callaham Jr., Christian A. Davies, Christian L. Lauber, Kelly Ramirez, Daniel D. Richter Jr., Noah Fierer, Mark A. Bradford

Journal:

Soil Biology and Biochemistry

Year:

2010

Language:

english

File:

PDF, 330 KB

english, 2010

45

Fungal growth on a common wood substrate across a tropical elevation gradient: Temperature sensitivity, community composition, and potential for above-ground decomposition

Courtney L. Meier, Josh Rapp, Robert M. Bowers, Miles Silman, Noah Fierer

Journal:

Soil Biology and Biochemistry

Year:

2010

Language:

english

File:

PDF, 262 KB

english, 2010

46

Variations in microbial community composition through two soil depth profiles

Noah Fierer, Joshua P Schimel, Patricia A Holden

Journal:

Soil Biology and Biochemistry

Year:

2003

Language:

english

File:

PDF, 165 KB

english, 2003

47

The influence of microbial communities, management, and soil texture on soil organic matter chemistry

A. Stuart Grandy, Michael S. Strickland, Christian L. Lauber, Mark A. Bradford, Noah Fierer

Journal:

Year:

2009

Language:

english

File:

PDF, 301 KB

english, 2009

48

Changes through time: integrating microorganisms into the study of succession

Noah Fierer, Diana Nemergut, Rob Knight, Joseph M. Craine

Journal:

Research in Microbiology

Year:

2010

Language:

english

File:

PDF, 219 KB

english, 2010

49

Effects of drying–rewetting frequency on soil carbon and nitrogen transformations

Noah Fierer, Joshua P. Schimel

Journal:

Soil Biology and Biochemistry

Year:

2002

Language:

english

File:

PDF, 400 KB

english, 2002

50

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

Fierer, N., Leff, J. W., Adams, B. J., Nielsen, U. N., Bates, S. T., Lauber, C. L., Owens, S., Gilbert, J. A., Wall, D. H., Caporaso, J. G.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 252 KB

english, 2012

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